Doing PCA and ICA analysis on EEG data with 24 channels?

What is PCA EEG?

Principal component Analysis (PCA) converts observations of correlated variables into a set of linearly uncorrelated orthogonal variables (Principal Components, PCs), ordered in such a way that each PC has the largest possible variance under the constraint of being orthogonal to all preceding components.

How do you run an Eeglab ICA?

To compute ICA components of a dataset of EEG epochs (or of a continuous EEGLAB dataset), select Tools → Decompose data by ICA. This calls the function pop_runica. m. To run ICA using the default options, simply press Ok.

How do you collect EEG data?

EEG scans are performed by placing EEG sensors — small metal discs also called EEG electrodes — on your scalp. These electrodes pick up and record the electrical activity in your brain. The collected EEG signals are amplified, digitized, and then sent to a computer or mobile device for storage and data processing.

What is the difference between PCA and ICA?


Specifically, PCA is often used to compress information i.e. dimensionality reduction. While ICA aims to separate information by transforming the input space into a maximally independent basis.

How do I read ICA components?

So we have the data data is X that's the data a record different channels and ICA is going to find for us W which is the mixing matrix and U which is which are the original.

Is ICA dimensionality reduced?

ICA is a linear dimension reduction method, which transforms the dataset into columns of independent components. Blind Source Separation and the “cocktail party problem” are other names for it. ICA is an important tool in neuroimaging, fMRI, and EEG analysis that helps in separating normal signals from abnormal ones.

What is difference between factor analysis and PCA?

The mathematics of factor analysis and principal component analysis (PCA) are different. Factor analysis explicitly assumes the existence of latent factors underlying the observed data. PCA instead seeks to identify variables that are composites of the observed variables.

What is PCA ICA?

The Periodic Commuting Arrangement (PCA) is a travel scheme negotiated between Singapore and Malaysia that requires travellers to stay in the destination country of work or business, i.e. Singapore or Malaysia, for a minimum 90-day period.

When can you use PCA?

When/Why to use PCA

PCA technique is particularly useful in processing data where multi-colinearity exists between the features/variables. PCA can be used when the dimensions of the input features are high (e.g. a lot of variables). PCA can be also used for denoising and data compression.

What is ICA algorithm?

In signal processing, independent component analysis (ICA) is a computational method for separating a multivariate signal into additive subcomponents. This is done by assuming that at most one subcomponent is a non-Gaussian signals and that the subcomponents are statistically independent from each other.

What is the difference between SVD and PCA?

The main difference between The Singular value decomposition and principal component analysis is that The SVD is a data-driven Fourier transform generalization, whereas PCA allows us to represent statistical variations in our data sets using a hierarchical coordinate system based on data.

What is U and V in SVD?

Properties of the SVD

U, S, V provide a real-valued matrix factorization of M, i.e., M = USV T . • U is a n × k matrix with orthonormal columns, UT U = Ik, where Ik is the k × k identity matrix. • V is an orthonormal k × k matrix, V T = V −1 .

Is PCA better than SVD?

What is the difference between SVD and PCA? SVD gives you the whole nine-yard of diagonalizing a matrix into special matrices that are easy to manipulate and to analyze. It lay down the foundation to untangle data into independent components. PCA skips less significant components.

Is PCA supervised or unsupervised?

Note that PCA is an unsupervised method, meaning that it does not make use of any labels in the computation.

What are the limitations of PCA?

Disadvantages of Principal Component Analysis

  • Independent variables become less interpretable: After implementing PCA on the dataset, your original features will turn into Principal Components. …
  • Data standardization is must before PCA: …
  • Information Loss:

Can you do PCA twice?

So you still could do a few PCA on a disjoint subset of your features. If you take only the most important PC, it will make you a new dataset on wish you could do a pca anew. (If you don’t, there is no dimension reduction). But the result will be different from the result given when applying a pca on the full dataset.

Why is PCA not good?

The two major limitations of PCA: 1) It assumes linear relationship between variables. 2) The components are much harder to interpret than the original data. If the limitations outweigh the benefit, one should not use it; hence, pca should not always be used.

Does PCA perform feature selection?

Principal Component Analysis (PCA) is a popular linear feature extractor used for unsupervised feature selection based on eigenvectors analysis to identify critical original features for principal component.

Does PCA reduce accuracy?

Using PCA can lose some spatial information which is important for classification, so the classification accuracy decreases.

Can I use PCA with categorical variables?

While it is technically possible to use PCA on discrete variables, or categorical variables that have been one hot encoded variables, you should not. Simply put, if your variables don’t belong on a coordinate plane, then do not apply PCA to them.

Does PCA work on nominal data?

So yes, you can use PCA. And yes, you get an output.

Can PCA be used for qualitative data?

PCA to qualitative data, the alternating least squares (ALS) algorithm can be used as a quantification method.